This is a QFAB course and places are highly limited as Graduate School is paying the fee. If you are unable to attend, please de-register (or email graduateschool@uq.edu.au if you are unable to do so). An unexplained absence could result in all your future QFAB registrations becoming Waitlisted.

This hands-on workshop will introduce users of the R software environment to the techniques involved in generating reproducible, dynamic data analyses and reports. Using literate programming approaches, participants will learn to build automated reusable reports in R. Prior knowledge of R is required (Introduction to R workshop is strongly recommended) as the basics of R will not be covered.

Syllabus

●Building dynamic reports for reproducible research with literate programming techniques

●Reformatting data and summarising and integrating datasets

●Generating high-quality graphic presentations of data

●Producing reusable scripts in R

Learning Objectives

●Import tabular data files into R

●Use R to merge data from two or more files based on common fields

●Extract data from a table and summarise it in both text and graphical formats

●Create a RMarkdown template that combines automated data analysis with free-form text interpretation

While you are waiting, get started with R and RStudio:

NOTE: The examples used in this course will be from bioinformatics. You may also want to consider attending the R sessions in the Centre for Digital Scholarship. See the Library's training link for more information on the latest sessions.

About Research & analysis

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Your research degree requires the ability to apply …'analytical and critical thinking skills to generate new knowledge, investigate problems and develop inventive solutions.' (UQ HDR Graduate Attributes, 2017) This starts with the way you design your project, your review of existing literature, the methodologies you use and the analysis you apply. Building these skills during your research degree will equip you to engage these same skills in your future career and apply them in a wide variety of contexts. 

Research methods

The Graduate School has a range of research methods sessions available.

Qualitative Research Institute for Social Science Research (ISSR) Queensland Facility for Advanced Bioinformatics (QFAB)

Library workshops

The library offers a range of workshops under the headings below. 

R and Python Research data management Data visualisation

Useful links

  • RStudio cheat sheets
  • Data Management at UQ (UQRDM) 
  • Sage Research Methods 
  • Join Sage’s Methodspace 
  • Publons Academy: A free online course for peer reviewers
  • Hacky Hour (supported by RCC, QCIF, IMB and wonderful volunteer helpers!): RCC runs consultations every Tuesday at Cafe Nano. Come and ask IT questions such as: getting started with Python and R, stats, machine learning, bio-image, software tools, research data management (RDM), how to access high performance computing, cloud data storage and tools for data cleaning and data visualisation. Bring your project's IT problems or come along as a helper! Very occasionally Hacky Hour may not run; follow us on Twitter (@HackyHourStLuc​) to get the latest announcements. Aside from the usual IT research questions, 
    • First Tuesday of the monthBioinformatics Hacky Hour, ask bioinformatics analysis, software and pipeline questions
    • Last Tuesday of the monthBioLab Hacky Hour, ask about experimental design and technical sample processing questions to get started in the lab